PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0270.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 443aa    MW: 48619.5 Da    PI: 4.7324
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.69.1e-28130195171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++++giv+ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  Kaladp0060s0270.1.p 130 RYDSSLGLLTKKFISLIKQEKDGIVDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKMLKNQIRWKG 195
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-29127196IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-17130193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.7E-34130195IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-24132195IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.80E-36206312No hitNo description
SuperFamilySSF1440749.68E-26210312No hitNo description
PfamPF164215.8E-26212310IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLESAPSSQR PNRQQILSSA KPPSGDSYYT FSSVSCKSRR LADRGEDGVV VRSLLYREKD  60
TKESEAQISR VAVGGSLKTS RSSASMLKSG KGDKASKTRV VKSGGPGPRT PASDVGLPLV  120
NNLSAANSCR YDSSLGLLTK KFISLIKQEK DGIVDLNKAA DTLEVQKRRI YDITNVLEGI  180
GLIEKMLKNQ IRWKGIDVSK PGVCNESVGS IQGDIETLSS EEHKLDEKIS EMQGKLTDLF  240
EDENNKKWLF LRDEEIMTLP CFQNETLIAV KAPHGATVEV PDPDEDGDHS EKRYRILFRS  300
IMGPIDVYLV SQFEEKVEEV YGNGETSSIQ TASKIDTPPR NTIADERIPD DQQIYSDLNT  360
LPDVGGIKKI VPSEVDNDAD YWLLSEADVS ITDMWSTEDC TGLNGSGFDT WRPDLASSEQ  420
PLPPTGTTPK AKRALFASNS DM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-24130196774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477175.11e-144PREDICTED: transcription factor E2FB-like
SwissprotQ9FV711e-119E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0B0N9E21e-144A0A0B0N9E2_G
STRINGVIT_06s0080g01110.t011e-135(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-120E2F transcription factor 1